sbc.orthoxml
Class Membership

java.lang.Object
  sbc.orthoxml.Scoreable
      sbc.orthoxml.Membership

public class Membership
extends Scoreable

The membership class represents a group membership of gene. The same gene object can be in multiple groups. The membership encapsulation allows to assign different scores to same gene depending on the group.

 {
        @code
        OrthoXMLReader reader = new OrthoXMLReader(myFile);
        Group group = reader.next();
 
        Map<String, ScoreDefinition> scoreDefinitions = reader
                        .getScoreDefinitions();
 
        for (Membership member : group.getMembers()) {
                //accessing the gene
                Gene gene = member.getGene();
                //accessing the scores that are assigned to gene
                List<Double> scores = member.getScore(scoreDefinitions
                                .get("myGeneScore"));
        }
 }
 

Author:

Thomas Schmitt

Constructor Summary

Membership(Gene gene)
Creates a Membership object for Gene gene.

Method Summary

Gene	getGene() Returns the gene that this membership stands for.

Methods inherited from class sbc.orthoxml.Scoreable

addScore, getDefinedScores, getScores

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Membership

public Membership(Gene gene)

Creates a Membership object for Gene gene.

Parameters:

gene - the gene o be nested in the Membership

Method Detail

getGene

public Gene getGene()

Returns the gene that this membership stands for.

Returns:

gene the gene